PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000151784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 230aa    MW: 25013 Da    PI: 6.2184
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000151784genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.67.5e-42751741100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll+++pe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+a+la+
  MDP0000151784  75 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTVAHRVFGASNIIKLLQEIPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVGELQAQLAQ 170
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +++e
  MDP0000151784 171 AQAE 174
                    9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.83274175IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-4275172IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEFIAXTTTT PTSPPPFSHS PSSSISSPST APFPSPXSHH LSNYSSPHAA NSNIATNPFP  60
TYPSPPPPPP VVLSPCAACK ILRRRCVEKC VLAPYFPPTE PLKFTVAHRV FGASNIIKLL  120
QEIPESHRAD AVSSMVYEAN ARIRDPVYGC AGAICQLQKQ VGELQAQLAQ AQAELVNMQC  180
EQGNLIALIC MDMTQSKEQA ILQQQLSSCN DTICFPDENN LGTTWEPLWT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354087.11e-167PREDICTED: LOB domain-containing protein 1-like
RefseqXP_008369390.11e-167PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR01e-73LBD1_ARATH; LOB domain-containing protein 1
TrEMBLM5X5X51e-100M5X5X5_PRUPE; Uncharacterized protein
STRINGPOPTR_0008s04350.15e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-61LOB domain-containing protein 1